Scaffold Ga0190275_10003632

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0190275_10003632

Scaffold Ga0190275_10003632

Overview

Basic Information
Taxon OID	3300018432 Open in IMG/M
Scaffold ID	Ga0190275_10003632 Open in IMG/M
Source Dataset Name	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	11037
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (46.15%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location Name	USA: Montana
Coordinates	Lat. (^o)	45.2639	Long. (^o)	-110.8632	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002548	Metagenome / Metatranscriptome	549	Y
F092677	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0190275_100036326	F002548	GAG	MPKFEYESQTEPSSAFFERRRLRRVRMIVELTLNLISSDRTVSHREARCLVDCARKAVLDLFPGFEARYERIVQPHFDRVLQHRWPEEELHYSSPHEMVN
Ga0190275_100036329	F092677	N/A	MRVFPYVFAGLALLAAAACHSEPPPDHQTEWRDVLRTKPAAVAADASPDHKQVYADSVRAFVQRHPNHGRAREVWQRLQLEFADDLAGAGRYQDAIRFYRAVLAHHPDSEHARRGLAMAAARLAVTREKLLALSKGMSHRQVAGVLGKPIPGWTIKNRRAGTTFEAWYYRTRTGELAAVYFRDGKVIAAEETSNSRLGRLGS

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