Scaffold Ga0066667_10170961

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0066667_10170961

Scaffold Ga0066667_10170961

Overview

Basic Information
Taxon OID	3300018433 Open in IMG/M
Scaffold ID	Ga0066667_10170961 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1561
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011813	Metagenome	287	Y
F077142	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066667_101709612	F011813	GGA	MKDEPSLKEIGERLERLDTPIRMWREARDRAFAAAFGPKQGKLSNLMARLPQAANAAAALGLGPRDEAFAAFGEICDLYARSDPARCATIRGVVHEHEARGLLEDYIGYASRILKQGGRPEWLERGIAAASIDDQRRDYRDWLMALGDLYLSARAARLDPTPVLKRIAERSNPERHAASPTPTREALANFEDSAYFMTSILPQLR
Ga0066667_101709613	F077142	N/A	MPREAIATVLFMGVVFGWFWGCLSLVLWSANERIPPLVIAPLWLTAEVASRLAIHPYLAGAIACGVIGLVPAAILLALARARGA

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