NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190268_10650572

Scaffold Ga0190268_10650572


Overview

Basic Information
Taxon OID3300018466 Open in IMG/M
Scaffold IDGa0190268_10650572 Open in IMG/M
Source Dataset NamePopulus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)761
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location NameUSA: Arizona
CoordinatesLat. (o)33.5944Long. (o)-109.1397Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003251Metagenome / Metatranscriptome497Y
F066519Metagenome126Y
F082231Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0190268_106505721F066519GAGLAITAYVSEEQQRQRVRELVRKKTGVDWPTLQVADIKKAMSS
Ga0190268_106505722F082231AGGAGGLTLATTEPGPCQMRSKTESPCLRRAVVEIRGIPLCEGCAREQEAYFAVGELTQETENLRSGPLGKTLGEALDGMRRRYADGLAAPTKAVPRPHWRSRLT
Ga0190268_106505723F003251AGGAMQTKTYATEVGAKKAAARAYKPAILRLANGRYACFHVGDALPQGARAVSRWGTNQWRAYD
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