NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066662_10027819

Scaffold Ga0066662_10027819


Overview

Basic Information
Taxon OID3300018468 Open in IMG/M
Scaffold IDGa0066662_10027819 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3304
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053159Metagenome141N
F090194Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0066662_100278191F090194N/AILMLGLIVELLIAVDGSILGAFAGAAIIAIASLQAFFIFLVYMHGRYGPRPVAVFAAISLLTVVPLFIALLYSVVMPHHGSLP
Ga0066662_100278193F053159GGAGMRPPVRISTEFAFLLSGVFIMLVAWALNLIGVLAGQTSSGHGVSDVYLWLILMFQGLAFSTMGVVGSNYRELMANPVLRKRYLVGFLLIADGGLHLLALNQHLENVAAAAFFAIVSPVQIVGGIVFQFLPRGLDRAWLLFTAFLIAAFVVTRTVPIWPIGYVEDVDPLGLFSKLVELGTVVILVSLVRADRLAKTTRSSSLPVNGQ
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