NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066662_10054865

Scaffold Ga0066662_10054865


Overview

Basic Information
Taxon OID3300018468 Open in IMG/M
Scaffold IDGa0066662_10054865 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2565
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012058Metagenome / Metatranscriptome284Y
F033539Metagenome / Metatranscriptome177N
F090347Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0066662_100548651F012058AGGAGGMKRALIGGLSALAMIVGVEAANAQANINPNVYPNNTSEQYGARAPWEWYASVGPVRRGRQCVVDVDINRGYGFMKDCPAPQGQAAAAPRRPRTAHRSHRKSSS
Ga0066662_100548652F090347GGAGVTVPGGALGEGCGGNQREEIAQRLQRLEEALEGTEYGATSRMARRLEIGFTRWHNAKSGGGLSQNLTLILLEQIPGLSADWLLRGRPEGLSYEMARVLGAPDRTD
Ga0066662_100548653F033539AGGGGGMKKLVVMMAAVSAIATVIGASDASAQSWGRRGANVRCLNGGVVQGRWYCNLKHAPPGEWNNYRSTGRYKLRAGMQGR
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