NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066662_10067509

Scaffold Ga0066662_10067509


Overview

Basic Information
Taxon OID3300018468 Open in IMG/M
Scaffold IDGa0066662_10067509 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2376
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016512Metagenome246Y
F018335Metagenome235Y
F042815Metagenome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0066662_100675092F042815N/AVPAVVEDSEHEDVTVAFAVIVIAAAGHVIVRPAGAVPVRVIEPAKLKVLVRETPTETPVCPTLRLAPVAEIVKSPTWTVAGAE
Ga0066662_100675093F042815GGAGVPAVVELNEQDDVTVAFAVIATAVAGQVIVRPAGAVPVRVTEPAKLNVLVRETPTETPVWPTFRLAPAALIVKSPT
Ga0066662_100675094F042815AGGVTLTAYVPAVVDDSEQEDVTVAFAVIATAVDGQVMVRPAGAVPVRVILPAKLNVLVRDTPTETPVWPTFRLAPVTEIVNSPTCETKLAV
Ga0066662_100675095F018335AGGALALRPVDGETVVVSCTVPVKPPDGVIVIVELPVAPALKSAGEVAVIEKSPPKVNVAVVG
Ga0066662_100675096F016512N/ALMFTMKVPTVGEVHERLDVAVALAASETGVTVNGWQVKPEGTISVRATEPTKLNVLVRVIVEAIDEPAAPLREVALIVKSPT
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