NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066662_10311850

Scaffold Ga0066662_10311850


Overview

Basic Information
Taxon OID3300018468 Open in IMG/M
Scaffold IDGa0066662_10311850 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1329
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001925Metagenome616Y
F016512Metagenome246Y
F018335Metagenome235Y

Sequences

Protein IDFamilyRBSSequence
Ga0066662_103118501F018335AGGAGMAPETTVRLVGQLAARPVEGETTVVRLTAPVNPPDGVIVTVELPVAPVLKSAGDEAVIAKSAPTVKVNVAVVG
Ga0066662_103118502F001925GGAVHEAATVAFAVMLTGTGQVTVKPVAGLVTAARLIVPAKLNVLVRLTDIAEPVAPELKLTGLPTLIVKSPT
Ga0066662_103118503F001925N/AVPAVVELKVQEAATVAFAVILTGAGQVTVKPVTGLVTAARVTVPAKLNVLVRLTDIEEPGAPELKLTGLPMLIVKLPT
Ga0066662_103118504F016512N/AMVTTKVPVVGEVQERLEVPVPLAVSDTGVTVNALQVKPEGRGVSERATEPTKLNVLVRVIVELIDEPAAPLGDVALIVKSPTWTVEAAE
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