NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066662_11300538

Scaffold Ga0066662_11300538


Overview

Basic Information
Taxon OID3300018468 Open in IMG/M
Scaffold IDGa0066662_11300538 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)745
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011803Metagenome / Metatranscriptome287Y
F023966Metagenome / Metatranscriptome208Y
F042033Metagenome / Metatranscriptome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0066662_113005381F023966AGGAGMNQDNRVLSRIGARELSEQEVEAVTGALTVRRTLTPCFVDSKQQLFAGDTSECGDV
Ga0066662_113005382F011803AGGAGMNDQNRVLIRRGARELTPTEADLVNGGFITFSLCTNNPSPDGDKHVGETGC
Ga0066662_113005383F042033AGGAGMNNQNRVLIRRGARELTENEVDLVSGGLHTETACTVPTASCPNKDGDASIGECGPHC

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