NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190270_10000005

Scaffold Ga0190270_10000005


Overview

Basic Information
Taxon OID3300018469 Open in IMG/M
Scaffold IDGa0190270_10000005 Open in IMG/M
Source Dataset NamePopulus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)252468
Total Scaffold Genes246 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)157 (63.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)41.136Long. (o)-111.9047Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021377Metagenome / Metatranscriptome219Y
F068102Metagenome125Y
F069314Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0190270_10000005138F021377GGAGMATQNPRNPNAAADLPQPVTTLEPEAVLELLRALRAQIGDVTPLTVAERQLLRRRAKLSNPVLQASINMIGALEQVSLAVAQPVDGVRRMDDETNRWTAVEDELRMMLQGIAGANLVRRQRVTLIAGQAYLIGAQLARDPANAVLRPHVEEIKRLKRIIRRKKAGEAEQLPSPVTSGSPK
Ga0190270_1000000515F069314N/AVSATGRRVEFLARAIVNRLEDRGVVEFVDAEAGILVVTRALEENFTAVELLERAARQKLGNRATEEQLEHEIRRMAAERNVIL
Ga0190270_10000005209F068102GGAMKRAVVFAAALLALACSKPEPLTADKAQQIVKSGSFKSEPVYAEVPQKVWWTPKAPKDDYDELAVRTLRNLEKNGLVTVTEEVTADSATYVAKVTPKGFPILGTAPSYRGAVYRAKICEKVYDGLRNFQRHPSQPTVGHAELAWHYDNETWLYPLFETKIDKPLDKPYASYVSFWYDDNDHQWKFSVNVRKTRAG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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