NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190270_10000016

Scaffold Ga0190270_10000016


Overview

Basic Information
Taxon OID3300018469 Open in IMG/M
Scaffold IDGa0190270_10000016 Open in IMG/M
Source Dataset NamePopulus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)146222
Total Scaffold Genes138 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)86 (62.32%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)41.136Long. (o)-111.9047Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001605Metagenome / Metatranscriptome664Y
F002548Metagenome / Metatranscriptome549Y
F092677Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0190270_10000016121F092677GAGMRVFSFVFAGLALLAAGCNAGDPPPDPQSEWRNVLRHKPAAVAPGASPDHKQVYADSVRAFVVRHPEHSRAQQVWQRLQLEFADDLAGAGRYQDAIRFYRSVLIKHPESDHARRGLALAADRLAVTREKLLELHKGMSHRQVANILGKPMPGWSVKQRRAGTTFEAWYYRTRTGEVAAVYFRDGKVLAAEESSSARLARISDSTPQ
Ga0190270_10000016124F002548GGAMPKFEYESHTESDSALFERRRVRRVRMIAELTLNLISSDRTTTHREARCLVDCARKAILELVPGFQLRFERIVKPHFDRVLQQRWPEEELRYSDPHETVN
Ga0190270_100000165F001605GGAVYPAPAMSETQALPESQSLAQLPLKILDEVIRQLRSTRNDIIRYGVWNVRNVTDDEFNKTDDRKLLGYFRQDLLETRFLSKGRRIDIVQLWRWFDDQMCGVEPLLVGEDEVFLNIQDKDLEKVRKRITEIESFFPALRSDDLEQFRRVKYKLRRTVMRLTYDLHHIFKRLEKYRKNIFMAGGAPPHLDRERVPLEAVAEIPEPPMLDEHEHELDA
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