NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190271_10325769

Scaffold Ga0190271_10325769


Overview

Basic Information
Taxon OID3300018481 Open in IMG/M
Scaffold IDGa0190271_10325769 Open in IMG/M
Source Dataset NamePopulus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1608
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)41.109Long. (o)-111.7531Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F081905Metagenome114Y
F094821Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0190271_103257691F081905AGGAGMAIKTGRYGQVKWDAAGTTPVLLISLNAWTGDFKTEMEDVTCFGDVNRVYIPGMKNAQGTIAGFWNSANVEIFEAAEQDTPGMLELVPNSTEPTFLWSGLAYLDASIDASLQAPKVSGTWTAAGPFLLEGTVLSAAAAAARQQRLTGRPRVDNTLPTEGEQPAA
Ga0190271_103257692F094821GGCGGVFDSLTIHGGAGSVLWGYRVAVELKSWRITRVKTEGGHWILNGTIARIDKFQARQAPLLFTAPRPQGFWAWPIDAIDIGETSLRAHLGPPER
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Institute for Fundamental Biomedical Research
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