Basic Information | |
---|---|
Taxon OID | 3300018481 Open in IMG/M |
Scaffold ID | Ga0190271_11493217 Open in IMG/M |
Source Dataset Name | Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 793 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium MnTg02 | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Utah | |||||||
Coordinates | Lat. (o) | 41.109 | Long. (o) | -111.7531 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F087249 | Metagenome / Metatranscriptome | 110 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0190271_114932172 | F087249 | GGTGG | MQDTDEPTTKSVRARMDAYIAVACESTDIDPLNINVVDEIAKRFLETLTPLEMGFLMHDDPQPLSLQELDSDIKQKYRAKYGTNNLKRGQFFRLKSGSITFFSHEHNLKFKVDN |
⦗Top⦘ |