NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0066669_10107784

Scaffold Ga0066669_10107784


Overview

Basic Information
Taxon OID3300018482 Open in IMG/M
Scaffold IDGa0066669_10107784 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1952
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000512Metagenome / Metatranscriptome1064Y
F000739Metagenome / Metatranscriptome913Y
F070523Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0066669_101077841F000512N/AAGGINRFGEPNYRAIWGWNRLAWIGGKFEDRDEHGLLLRERIELREEPKYPAVNRWHIERWLPPEAYGSPRQWYSQTIEHENGISIPALGPYPSRGDYEHCFTLEGARGEFIQLTPTVAEHIARAIEFSRALPRTKTRAHLYERAHRKEQQYESWAYDVLDDAVPAFHKQPFVTVR
Ga0066669_101077843F000739N/AMTRIEIWLKGLFAAAISGGAGGVLTGFAAVGIDPQHFNLQAGIGATLRIAAAAALINAVIGVAAYLQKSPLPTE
Ga0066669_101077844F070523AGGAVKSDKVSLFPDERVAIHAKLGSILKGGAPAEILLVIILLFALRPVPKCKAPKKKGQPKRL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.