NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066669_10159988

Scaffold Ga0066669_10159988


Overview

Basic Information
Taxon OID3300018482 Open in IMG/M
Scaffold IDGa0066669_10159988 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1670
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003372Metagenome / Metatranscriptome491Y
F017206Metagenome / Metatranscriptome242Y

Sequences

Protein IDFamilyRBSSequence
Ga0066669_101599881F003372GAGGMAITQGRLPFVFGIVVLATLLIAAPAAHAACTSPKNICKHLDECLQRTSDPNNKNADGIRAGVKARNGQIVSAGAEACARDLGKKQQWDEWARGCSELEFFQMAKVGLELGKAHCDRYSQ
Ga0066669_101599883F017206GGAMCSHRHGHNLLLTSVAALLMATSAAHARPELSKTESWKLTLGTWCVGDHPNDNEAYVGIARDQCGENEATLVIGENGYTWERDEGLSCRYSSGKARFDPTIAASTKTVGVWVFHIVAACVRKPLEGVVRKYTHSFDMYVSNGTLWIENLRSDKKP
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