NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066669_10170091

Scaffold Ga0066669_10170091


Overview

Basic Information
Taxon OID3300018482 Open in IMG/M
Scaffold IDGa0066669_10170091 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1630
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049862Metagenome / Metatranscriptome146Y
F078454Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0066669_101700911F078454GGAGMVPQGSGRSLLDALCVEHPEWRPLLVLIEAALREAESPHWERFVPVTGHQADDGRPLLDGAVISVDPKLVGRWVRHILALATDAGTEVEPLAQAVAAGRLDPSSLFEAAVSQDVDRFHDIARVERDYCGVLRGLASLIAMPMLQTC
Ga0066669_101700913F049862GGAGGMDQRSKFLGMSLVVLLGLVPAACSSTGTSRVSMSSICKATGGTYSDGTCQPAPNPQTAAQLCAAHGGVYTAGGDYCEVDNSMFWKP
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