NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187911_11694105

Scaffold Ga0187911_11694105


Overview

Basic Information
Taxon OID3300018494 Open in IMG/M
Scaffold IDGa0187911_11694105 Open in IMG/M
Source Dataset NameGoat fecal pellet fungal communities from Santa Barbara, California, USA ? diluted pellet 2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)618
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.4204Long. (o)-119.6671Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F088002Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0187911_116941051F088002N/AATEAQLAYYGDWYADYVLTVNKDVTFNANGGADGYLSGQYDAWSENWVNVPFENVTLEANKPLKIMEYAAKMLGQSGLKLTYNDVYTSVKDFDCGIFFEEEFLAANPDLEVTLELRMYNPEDETESYVIGETYNFEVPALPTATVTDITADTDNLTFALNFKADEATEAQLAYYGDWYADYVLTVNKDVTFNANGGADGYLSGQYD
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