Basic Information | |
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Taxon OID | 3300018601 Open in IMG/M |
Scaffold ID | Ga0188850_1015840 Open in IMG/M |
Source Dataset Name | Metatranscriptome of marine microbial communities from Baltic Sea - GS679_3p0_dT |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | J. Craig Venter Institute (JCVI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 699 |
Total Scaffold Genes | 1 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Pseudo-nitzschia → Pseudo-nitzschia australis | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea |
Source Dataset Sampling Location | ||||||||
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Location Name | Baltic Sea | |||||||
Coordinates | Lat. (o) | 56.1664 | Long. (o) | 16.378218 | Alt. (m) | Depth (m) | .3 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F011850 | Metagenome / Metatranscriptome | 286 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0188850_10158401 | F011850 | N/A | LDAIEGAQQLLAAAQNVPFVDEVTGEAQGFTAPVNHFASVIGLWVLFALPVWSAAYKQAGCDTPEWFGISQVAEDAPGIGLIAKAAPAYDGPSFREGVEYVFSFVWKPPILIAWKPRADLDRDAMDPARDTVVSSLYKSFGGATDKTAIYDEEDQLLILSDIEELPETPLGKRRNAIAEANGWFSGNPSFGKSLLEYSEETRKGKRDSGTVAISVAELQKLRAEAAKAR |
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