NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193133_1002887

Scaffold Ga0193133_1002887


Overview

Basic Information
Taxon OID3300018617 Open in IMG/M
Scaffold IDGa0193133_1002887 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000604 (ERX1782236-ERR1711896)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1150
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameMediterranean Sea: TARA_018
CoordinatesLat. (o)35.7528Long. (o)14.2765Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003869Metagenome / Metatranscriptome464Y
F015105Metagenome / Metatranscriptome257Y
F023367Metagenome / Metatranscriptome210N

Sequences

Protein IDFamilyRBSSequence
Ga0193133_10028871F003869AGGAGGMAKRQYKRTHFYSIASMMTDEEVHQVWEIVGNALDRNGFVDADGELSIRVYDETLKKNVINAIDKSLEV
Ga0193133_10028872F015105GAGGMNLESRKANMVYEIASLINDDPLSAPVLIEELVDVMFDEQIDHIEDVIVNHFGVEVYGEETVELLSQQ
Ga0193133_10028874F023367GGAGGMTKTKFIFEEKFISYANVEIYAENEEDARLQFQNGNYQYYDVSDFTEGHELISVKEEEPVNYYQGA
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