NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0192914_1001516

Scaffold Ga0192914_1001516


Overview

Basic Information
Taxon OID3300018637 Open in IMG/M
Scaffold IDGa0192914_1001516 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_072 - TARA_N000000837 (ERX1782121-ERR1712056)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1327
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium monilatum(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameSouth Atlantic Ocean: TARA_072
CoordinatesLat. (o)-8.6831Long. (o)-18.0095Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065389Metatranscriptome127N

Sequences

Protein IDFamilyRBSSequence
Ga0192914_10015161F065389N/ACAWTGYKCYEKNATWASCLSSCHPKKWNGGVSEVPLVQKGKPLANPPAHWNVSFTPASPGPWTCKRLAPQAKPGILNGTALFCFSVAISDTGGKKKSEDVELLLQAQKLKTHVFACERWMVFSDIAMTLDTKAGGFVKVAYPKGIKRPNTKNYVNVPVFLNVWRAIKTDTNWKSFPWVVKADPSTVFIPQRLRELVRYQVVTESGVYMENCKYVRMSFHGSLEVYSGLAFSKLLAHMEDCQTRLPIHSGDHAHFREYGEDKFAAWCMHLEGVDKIPSRQQVDSLPEDTMIQGLHITVSCPGHRTKFERTMKKWHPNCTNTKSAGLHAFRKPTLWAKCFRETMMLGA
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