Scaffold Ga0192846_1016154

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0192846_1016154

Scaffold Ga0192846_1016154

Overview

Basic Information
Taxon OID	3300018655 Open in IMG/M
Scaffold ID	Ga0192846_1016154 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_064 - TARA_N000000522 (ERX1782387-ERR1711943)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Canada's Michael Smith Genome Sciences Centre
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	778
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Hemiselmidaceae → Hemiselmis → Hemiselmis andersenii	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	Indian Ocean: TARA_064
Coordinates	Lat. (^o)	-29.5019	Long. (^o)	37.9889	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F073633	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0192846_10161541	F073633	N/A	TSIKMVDWDWDKKEEEENYSGPGSERGQVNRSDEIGARSEGRLNAAKQRSEELGLGSKSGLATGDLQEGDRDPVTGRLILDPLKIPTADQGAPGTWEEYLAMRKAKEGGVAKDLQGNVIDDVKPTYTVQAGTWGPPKEAQKENLDDIFGKKAVSEPAIEVDPEWEAQKAARAAEEAAQKDEIEAKMAKWLADAAAKKAQGGQ

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