NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193067_1016457

Scaffold Ga0193067_1016457


Overview

Basic Information
Taxon OID3300018659 Open in IMG/M
Scaffold IDGa0193067_1016457 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_142 - TARA_N000003102 (ERX1782249-ERR1712111)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1052
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameGulf of Mexico: TARA_142
CoordinatesLat. (o)25.6168Long. (o)-88.4532Alt. (m)Depth (m)125
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F100091Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0193067_10164571F100091GGAMVNHRSGVDKSGYHWLLLLLRCSQIHSFNRVSSNLFLSDGLLNFFNSFFHNCLDNLLLNRLLHRLLYSGNLCRLSNFDVVVNANRQLAAEDSGVRGVDSMVDNRGGMVDSGVVNHRSSVVDDGRAAVDCVMYKGGVLDRSVMDSVNGSMCVVDWHVRPVHAVRCLWVEGGEAGVWPGSGQGEQQQRDGLHDVCRWYAGLCGSPH
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