Scaffold Ga0193571_1004818

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0193571_1004818

Scaffold Ga0193571_1004818

Overview

Basic Information
Taxon OID	3300018671 Open in IMG/M
Scaffold ID	Ga0193571_1004818 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine prokaryotic communities collected during Tara Oceans survey from station TARA_078 - TARA_B100000524
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Canada's Michael Smith Genome Sciences Centre
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1010
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_078
Coordinates	Lat. (^o)	-30.1885	Long. (^o)	-43.2831	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F074918	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0193571_10048181	F074918	N/A	RVKAITLKVSPTYHLDRVESVTLKSFRKVVGYDTFNSILKKDRDEKKDSSDHYNVTVSMMIQRIPEEKSAPPLHDPYDGTKTLAETLDKGFPYDDADNSPDDQVAHWKDKKVSPATLVGKLNGENITKESLVNLVRDTDSPITQGLVQLDSEMNTESKGNDFALMDNNVTIAHLKNLVIDKPAPITTKLAQTSSEGNDFALMDNNVTIAHLKNLVIDKPAPITTKLAQTSSEGNDFALMDNNVTIAHLKNLVIDKPAPITTKLAQVESKGNDFALMDNNVTIAHLKNLVIDKPAPITTKLAQTSSQGNDFALMDNNVTIAHLKNLVIDKPAPITTK

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