NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193571_1009238

Scaffold Ga0193571_1009238


Overview

Basic Information
Taxon OID3300018671 Open in IMG/M
Scaffold IDGa0193571_1009238 Open in IMG/M
Source Dataset NameMetatranscriptome of marine prokaryotic communities collected during Tara Oceans survey from station TARA_078 - TARA_B100000524
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)769
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_078
CoordinatesLat. (o)-30.1885Long. (o)-43.2831Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006184Metagenome / Metatranscriptome379Y

Sequences

Protein IDFamilyRBSSequence
Ga0193571_10092381F006184N/AGTPQFLAYAGDLIALVASQLAAAYAGVKSIEAAVSFTNGFYYTYAGYSTTGNLLGLWELLSVILFLTWALGISVAGYIEGALLWERYEAMETVGQTITIVEGYKYLALGCVIGVGAWISGLALGDSAAKLLGFFDAYDSQTRNEASDGSTTDAAGTAIVYDLAFHFVTLLFSYTTISAIAIGAFAFGYTYLGQGDVTELA
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