NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193229_1002934

Scaffold Ga0193229_1002934


Overview

Basic Information
Taxon OID3300018673 Open in IMG/M
Scaffold IDGa0193229_1002934 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_048 - TARA_N000000115 (ERX1782433-ERR1712189)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1159
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameIndian Ocean: TARA_048
CoordinatesLat. (o)-9.4153Long. (o)66.303Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014356Metatranscriptome263N
F035620Metatranscriptome171Y

Sequences

Protein IDFamilyRBSSequence
Ga0193229_10029341F035620GAGGVGYGRMIGRSGWSVVSSRLVVDKGRLSMGNMLVVDCGYGSSMVDLLVVVMGSDRGRDNGSLVASVAMADTGERTSHSVGCVEVTLRAGQGSQAGADKQDRLLTEHGCPSSNLNRLSNPH
Ga0193229_10029342F014356GGAGVDYVEEPAEVCVPTLETKCDQEDGGQTLELRTEEECQDVVRTVCVERHNVVDNEVCAYSYTLHPVPTEAKLVEPHWAEVCHQETICLNPHHTKPSYGAPPAYCHEEIHETCALEPTLEPVIRPVTVSLPQPVEVCINKQIVLPYLECEKVKDRHCMVVPRAGKGYKYQIDKCSVEKGEPACQETLLQLPQQACLQRIERVNTVYTTPEKVSYSG
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