NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0188851_1000176

Scaffold Ga0188851_1000176


Overview

Basic Information
Taxon OID3300018682 Open in IMG/M
Scaffold IDGa0188851_1000176 Open in IMG/M
Source Dataset NameMetatranscriptome of marine microbial communities from Baltic Sea - GS680_0p1
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13527
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (29.27%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)56.1664Long. (o)16.378218Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002243Metagenome / Metatranscriptome578Y
F017641Metagenome / Metatranscriptome239Y
F040099Metagenome / Metatranscriptome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0188851_100017623F002243N/AMINQMTDFPTIQSKDGTMIVSFYPVKTPFGDVSKQWCLQVLEWQGIETMSKKYLNRVEKSRAIRDRLAHDYVFVKDNSNLPQLGNPMAGAV
Ga0188851_100017625F017641N/AMKDQNTSEVYHYHTNWKEGKVNQMWIQEIEESNDVYKYVAIAFNPEKNVSMVMSNPRGYYDTLQWVRKFCGSFSILPV
Ga0188851_100017632F040099N/AMIYEVQTYDATDNTVYYETVEDVIDYEDARDIIAEKYPNRKVIAVQEKYKVK
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