Scaffold Ga0188885_1018924

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0188885_1018924

Scaffold Ga0188885_1018924

Overview

Basic Information
Taxon OID	3300018687 Open in IMG/M
Scaffold ID	Ga0188885_1018924 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine microbial communities from Baltic Sea - LD390M_ls1
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	894
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Source Dataset Sampling Location
Location Name	Baltic Sea
Coordinates	Lat. (^o)	58.581234	Long. (^o)	18.232801	Alt. (m)		Depth (m)	90
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F075510	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0188885_10189241	F075510	N/A	LQVVTFFGLVLCCTHLSEITLTIAANIMHTFFLFHGKVYXXIFTDKNLNTDTLIRLAYGHYVSAFYMAYLGLLHGIDMHYDXKNEATYDGLEPEMSWXDEALSNELGTFIEALIVLNIICWXLYPEPEALSYEIFMXGDIGLISDVRFYGVAPHXYFRPFMAXLIVCPHHKTGIFGLIFLFFALFHQPTLHGVNENGFFYKRRLLFTINRVKQKNFYKQTHLNLEMNLFFQTTYALFIMSALYTNTFLPYGRFYNRLGGNIGMLGAYFYVFLYLGITSLRRPYXLELYFYFIYNRTN

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