NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0188885_1023174

Scaffold Ga0188885_1023174


Overview

Basic Information
Taxon OID3300018687 Open in IMG/M
Scaffold IDGa0188885_1023174 Open in IMG/M
Source Dataset NameMetatranscriptome of marine microbial communities from Baltic Sea - LD390M_ls1
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)810
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)58.581234Long. (o)18.232801Alt. (m)Depth (m)90
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007004Metagenome / Metatranscriptome360Y
F009987Metagenome / Metatranscriptome310Y

Sequences

Protein IDFamilyRBSSequence
Ga0188885_10231742F007004AGGMKNVMIGFCLIVLIGCGTSNAYQKPSVRIVGEAQMTKLPNGNYEVTPRWIKDRFNAENSMVKQLEDCREGG
Ga0188885_10231743F009987GGAGMIGSIIGNALGLGLKIMDKIEKNSDKASFEEFKARKKEMDNSLADTDVEGIDSMFEYLADRARGGSTGRKG

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