NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193274_1000299

Scaffold Ga0193274_1000299


Overview

Basic Information
Taxon OID3300018703 Open in IMG/M
Scaffold IDGa0193274_1000299 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_098 - TARA_N000001580 (ERX1782405-ERR1712108)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2068
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameSouth Pacific Ocean: TARA_097
CoordinatesLat. (o)-25.826Long. (o)-111.7294Alt. (m)Depth (m)188
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000049Metagenome / Metatranscriptome3277Y
F000371Metagenome / Metatranscriptome1220Y

Sequences

Protein IDFamilyRBSSequence
Ga0193274_10002991F000049N/AKVYTSAEFKRERDNFHALCKDLEREEIKRWLKQILEILMAERSKEERGDQNKKLEGLIVKHEELIPTVLATQIKVDLYWKCYAYGDELKPHIEFLDTIMLSSTREIAPSCVENVDELIERQEKALTQLETKRAIVNDLISKGKQLLENPDKPKFLEGHVKRIVDGWDDTKEKAQARLKLLNNTKDAWVGYAEGLETIAVEFEKGDDEIKKVKKRFNLQAAFEDLEKRQKIFNETKNTVEGMYNSIQNNYDVMI
Ga0193274_10002993F000371AGGVPQDAQDYKDELMRVRDYILDLQKRVKQECDNFSEDVKYWAEYKTGIKSFRPWLDSAESKSKDGLAKPQTLDEANGMYATVNDFAKACTTHLEILTLAEAAANKMTTHKEADVEVAELKGRYEKVKGVSDEWCKKVDTLVKEWKLLDNTVNELNSWVAQDRNAEGEQQYSLEKMESTLGELKNIFKEKEKLVDSL

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