Scaffold Ga0192904_1004100

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0192904_1004100

Scaffold Ga0192904_1004100

Overview

Basic Information
Taxon OID	3300018721 Open in IMG/M
Scaffold ID	Ga0192904_1004100 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_070 - TARA_N000000666 (ERX1789483-ERR1719260)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Canada's Michael Smith Genome Sciences Centre
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1960
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	South Atlantic Ocean: TARA_070
Coordinates	Lat. (^o)	-20.4035	Long. (^o)	-3.1859	Alt. (m)		Depth (m)	5
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F085090	Metatranscriptome	111	N
F094857	Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0192904_10041001	F094857	GGA	VKLADRDSLDPLGCLVKRAQMDQEGPQAKEDHRELKACQAWKAVREPLVLMDQMDRLDHLDQMDLLGIEEFLVYQALLAQLVPQANKDHKENGEILASQESKALRDHLGLLVLLGPLVSEASGVRRVRQESRELQEWVVDLVTRVHPVQQE
Ga0192904_10041002	F085090	AGGAG	VCQDLLGWLAVLDQSASLDPLVYRAVLERSDHRDSLEPRATVVSLAFRVFLDPLDPKDRRDLQAKMERTESQDQWAGVVLQDLTDLWVLWATLVLRDQEDHQARKAREVHLASLVLLGLLARQARATEWTWLP

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.