NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193038_1015807

Scaffold Ga0193038_1015807


Overview

Basic Information
Taxon OID3300018723 Open in IMG/M
Scaffold IDGa0193038_1015807 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_046 - TARA_N000000268 (ERX1782137-ERR1712170)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1092
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameIndian Ocean: TARA_046
CoordinatesLat. (o)-0.6625Long. (o)73.161Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003184Metatranscriptome502Y
F008676Metatranscriptome329Y

Sequences

Protein IDFamilyRBSSequence
Ga0193038_10158071F008676GGAGMKVYDYNQEFGGNYYQPMIQYINKKDLYGPFMKRQDVYLPHSAEVTSDKYTNMRYQDKSSAKHNLDDFLKSAYAKQMKELNGTTAKVMNTRMRGHVNNTILTPTKTSKLTRDHYIKMIHRMVLKEPASIPAM
Ga0193038_10158072F003184N/AMARVNMMKTIVTDRRQPHSPLDNVNTPYNPIRLLKGAPPGQEAVNHYISELSIEKKNNQKLSDKERKHLVMLEACDDEYNYHYKLYGQGAGADRDMKFYAPQLVKDYINQIRRF
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