Scaffold Ga0194246_1012874

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0194246_1012874

Scaffold Ga0194246_1012874

Overview

Basic Information
Taxon OID	3300018726 Open in IMG/M
Scaffold ID	Ga0194246_1012874 Open in IMG/M
Source Dataset Name	Eukaryotic communities of water from different depths collected during the Tara Oceans expedition - TARA_N000000618 (ERX1782150-ERR1711887)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1235
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F046825	Metatranscriptome	150	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194246_10128741	F046825	N/A	HAASVAAPLDLIDNLQELLINPEAAGVRLKRSTGEWDKEFDLGVIGLSFKIKYTDPSNLMKGGHAIVTFPGQKFFHGLHFDDVELDIHFNGGDVVDGLFDMKVDYKFVQKFTFLADRPQEGTLMVERKLEGGMWKTKMSIANVHHTPSPFFDFSMESDRMTKLHAVFKYDTDNHWEIKVDRVPGQSITGMVIIDGVEYKLIGTLDKAAKKLNVKLMGFQGRTHELDFKMSTAAEYGIFVTGDVHGPVDMKMVVKKDMKKVDFVVKHNNVNYAYIKLNGDAVMQGMIPTKVDYIMKYNIMDSEMEGKAKVNYNGQAPARTLKISFVPKHGEDLNLDFKMSGPNMRGWRFDFESTRSGTTLTKFHHEIDLVNDANVFDMNMKGDLNMDPMSVFYEFFCWKIGKCFTHGTRDTK

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