Basic Information | |
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Taxon OID | 3300018737 Open in IMG/M |
Scaffold ID | Ga0193418_1024202 Open in IMG/M |
Source Dataset Name | Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_125 - TARA_N000002025 (ERX1789417-ERR1719385) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | Canada's Michael Smith Genome Sciences Centre |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1056 |
Total Scaffold Genes | 1 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota | (Source: Euk_MAG) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
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Location Name | South Pacific Ocean: TARA_125 | |||||||
Coordinates | Lat. (o) | -8.892 | Long. (o) | -142.6358 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F021898 | Metatranscriptome | 216 | N |
Protein ID | Family | RBS | Sequence |
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Ga0193418_10242021 | F021898 | AGGAG | VGKQGSGIVEKAFALPLVNATYDSLASLSTPLQPYAEKGAAMMSSMGESYDAIKAGVQEKVPDAVSAKVTDAKGQVSAAVNSVDSSLCSGLDKLVDKVPALKQETPELYNSTKSSVGSYAFMATTYVASFTLVSYALKFSDFGMDGADRILKMIPGEKTQPLRSGLHWVRDEAAVVRQEGARRNGSERVLALENASLLEVLAGLLKCTYLLNLFGVPTAAVDADAPVKPAPDAVQGVVPEGENSGSTKNMEEVLESRHLAVDKVAATSDHVDAVVEEVAKVDDELVEVTKVQDVKSGKEG |
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