NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193063_1012464

Scaffold Ga0193063_1012464


Overview

Basic Information
Taxon OID3300018761 Open in IMG/M
Scaffold IDGa0193063_1012464 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_137 - TARA_N000002934 (ERX1789455-ERR1719449)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1332
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameNorth Pacific Ocean: TARA_137
CoordinatesLat. (o)14.2075Long. (o)-116.6468Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F085090Metatranscriptome111N
F094857Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0193063_10124642F094857AGGVEKLGQEECLEIWDHLVGLENLECLEKLADRALLEHLECPVRRAQMDQEDPQAKEDHRELKVCQAWKAVRELLVLMDQMDRLDHLDLMDLLGIEEFLVYQVLLAQLEPPANKDLKEKGEISASPESKALRDHQGLLVLPGLLESEVSGVRRVLQENRELQGWAVDLVTRVHLVPQE
Ga0193063_10124643F085090AGGAGVVCQDLLGWLAALDQLASLDPLVYRAVLERLDHRDSLEPRATAVSLVFRVFLDPLDLKDRRDLLAKMERTESQVQWVDAVLQDLMEPLVVWATLVLWDQEDHQVRRAREVHLESLDLLGLLDLQARAMEWTW
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