Scaffold Ga0193503_1055457

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0193503_1055457

Scaffold Ga0193503_1055457

Overview

Basic Information
Taxon OID	3300018768 Open in IMG/M
Scaffold ID	Ga0193503_1055457 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_138 - TARA_N000003011 (ERX1789448-ERR1719377)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Canada's Michael Smith Genome Sciences Centre
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	566
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	North Pacific Ocean: TARA_138
Coordinates	Lat. (^o)	6.3378	Long. (^o)	-102.9538	Alt. (m)		Depth (m)	60
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F105005	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0193503_10554571	F105005	GGAG	MYKAIIAALALSAPALGLKKPAHGAAALKVRGGTFGFDAHQTGEQCGIEEPEKEVVKTIKSAVTYPLKVLGISRGGALLDVSARETAEACEIEDPEPLVVRTIKAAFDYTAERVLESGVVPDELAKD

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