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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300018770 Open in IMG/M |
| Scaffold ID | Ga0193530_1000177 Open in IMG/M |
| Source Dataset Name | Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_152 - TARA_N000002783 (ERX1789454-ERR1719490) |
| Source Dataset Category | Metatranscriptome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Canada's Michael Smith Genome Sciences Centre |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5343 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | North Atlantic Ocean: TARA_152 | |||||||
| Coordinates | Lat. (o) | 43.7421 | Long. (o) | -16.9002 | Alt. (m) | Depth (m) | 25 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F085090 | Metatranscriptome | 111 | N |
| F094857 | Metatranscriptome | 105 | N |
| F104391 | Metatranscriptome | 100 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0193530_10001772 | F085090 | GAGG | VVCQDLLGWLASLDQLASLDHLASRAALERSDHRVNLEPRATAVSLASRVFLDPSDPKDKRDQQVKMERTESQVQWADVVLQDLMALWVVWATLVLRDPGGHQAKKVREVHLESLVLLDLLGLQARAMEWTWLP |
| Ga0193530_10001773 | F094857 | AGG | VSLVCLVKLADRALLDLEVCLDKRALMDQGDLQAKEDHQDLKACQAWKAVREPQVLMDQTDRLDHLDLMDLLETEGFLVYQVLLAQLDPQGSKDLKEKGETLASQESKVLRDHPDPLVLLGLLVSEVSGARRVHQESKELLAWEVGLVTRVHLVQQE |
| Ga0193530_10001774 | F104391 | N/A | MKENEGQLASPVKEECLVNSDPLDQEAKMDLKDQMVSLDHLDQRDLLDTRDPLDWLVFLVSEVFPGLKVLRVEEVIQAFLDQLVLMAGLARGVNKALLVPQDPLGKQEVLEIQGRQDLLVNRAQLV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |