NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193530_1026097

Scaffold Ga0193530_1026097


Overview

Basic Information
Taxon OID3300018770 Open in IMG/M
Scaffold IDGa0193530_1026097 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_152 - TARA_N000002783 (ERX1789454-ERR1719490)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1143
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameNorth Atlantic Ocean: TARA_152
CoordinatesLat. (o)43.7421Long. (o)-16.9002Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014356Metatranscriptome263N
F035620Metatranscriptome171Y

Sequences

Protein IDFamilyRBSSequence
Ga0193530_10260971F014356GAGGVPTLETKCDQEDGGHILELRTEEKCQDVVRTVCVERHNVVDNEVCAFSYTLHPVPTEAKLVEALWTEVCHQETICLNPHHAKPSYGAPPAYCHEEIHETCALEPVLEPVLRPVTVSLPQPVEVCINKQIVLPYLECEKVKDRHCMVVPRAGKGYKYQIDKCTVELGEPACQETLLQLPQQACLQKIERVNTVYTTPEKVSYSG
Ga0193530_10260972F035620GAGGMSYGGVIGRPGWSVVGSCLVVDKRWLSVCNMLVVDCSYRSCMVDLLVVVVGSDWGRDDGSLVASVAMADTGERASNSMGCVEEALRAGQGSQAGADKQDRLMTEHGCPSSNLNR
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