Basic Information | |
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Taxon OID | 3300018796 Open in IMG/M |
Scaffold ID | Ga0193117_1024283 Open in IMG/M |
Source Dataset Name | Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_004 - TARA_X000000410 (ERX1789505-ERR1719432) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | Canada's Michael Smith Genome Sciences Centre |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1007 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Acartiidae → Acartia → Acartia pacifica | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
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Location Name | North Atlantic Ocean: TARA_004 | |||||||
Coordinates | Lat. (o) | 36.5533 | Long. (o) | -6.5669 | Alt. (m) | Depth (m) | 40 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F009881 | Metatranscriptome | 311 | N |
Protein ID | Family | RBS | Sequence |
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Ga0193117_10242832 | F009881 | GGA | MASRDQRTNIFCNAMECVFVVRSRVDVLIIFLAEMLIHSLFSLELVGKSKLGSLLLQLGKLVLVLGDLLEGRLDELALHVTDGDGELVDLQVSQDDLTLEEEHLGLEFVPLVEVALADLLEVVHGGIVNVSLGAAPLGNDTEPLLSLALLLLLQLLGGLLTEKSPELLLPLGGHKSLLLGHDGVCP |
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