NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0192872_1039442

Scaffold Ga0192872_1039442


Overview

Basic Information
Taxon OID3300018813 Open in IMG/M
Scaffold IDGa0192872_1039442 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_066 - TARA_N000000809 (ERX1782297-ERR1712172)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)856
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameAtlantic Ocean: TARA_066
CoordinatesLat. (o)-34.9449Long. (o)17.9189Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009310Metatranscriptome319N

Sequences

Protein IDFamilyRBSSequence
Ga0192872_10394421F009310N/AWTGVGTLNKADMKLNLRMNSELSGKKYFMNFDLNPAGQWGMHITGDIDGPLDAKWTMQKDFKQGEVSMKYKNQNYGVMQLKGDTDLGDTGFIPIMFDYVVKYNIPMTGQDYQGKAKVKFDARAPAKKFEISFAPKTGTPFQYTFDFDYSSGFKYDSDLKVNGTTVEKVVGDLTWTNTWDKFELESTERYSQTKENPFYELAKWMCGGHEFTEGVQTRKIFFDKVNKAHFFNKMSFEEKTVFDGKTWYHIKYDNTAPRTAFLFTFLPYNMDRNWTYEGGREHTAN
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.