Scaffold Ga0193412_1000389

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0193412_1000389

Scaffold Ga0193412_1000389

Overview

Basic Information
Taxon OID	3300018821 Open in IMG/M
Scaffold ID	Ga0193412_1000389 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_125 - TARA_N000002021 (ERX1789489-ERR1719145)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Canada's Michael Smith Genome Sciences Centre
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3067
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	South Pacific Ocean: TARA_125
Coordinates	Lat. (^o)	-8.9124	Long. (^o)	-142.5595	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F085090	Metatranscriptome	111	N
F094857	Metatranscriptome	105	N
F104391	Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0193412_10003891	F104391	N/A	LGWLVYLVSEEFLGQKVLRVEEVILAFRDQPDLMAEQARGVNKESLVLQDPLGRLEALAIQGRQGLSENRDQLV
Ga0193412_10003892	F094857	AGG	VEKLDQEECLEIWDHLVGLENLECLVKLADRDSLEPQGCLVKRAQMDQEDPQAKEDHREHKACQAWKAVREPPVLMDQMDRLDHLDLMDLLGIEEFLVYQAPLAQLEPQANKDHREKEEILASQESKALRDHLGLLVLLVLLVREVSGVRRVHQESRELQGWAVDLVTRVHLVQQE
Ga0193412_10003893	F085090	AGGAG	VCQDLLVWLASLDQLASLDPLVYRVALERLDHQDSLEPRATVVLLAFRVFLDPLDPKDRRDLQAKMEKTENQVQWAGVVLQDLTDLWVLWATLVPQDQEDHQARKAREVHLVSLVLLGLLVLRARATEWTWLP

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