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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300018824 Open in IMG/M |
| Scaffold ID | Ga0188874_1004540 Open in IMG/M |
| Source Dataset Name | Metatranscriptome of marine microbial communities from Baltic Sea - GS850_ls4 |
| Source Dataset Category | Metatranscriptome |
| Source Dataset Use Policy | Open |
| Sequencing Center | J. Craig Venter Institute (JCVI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1615 |
| Total Scaffold Genes | 2 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Baltic Sea | |||||||
| Coordinates | Lat. (o) | 54.570232 | Long. (o) | 11.332183 | Alt. (m) | Depth (m) | .3 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000139 | Metatranscriptome | 1948 | Y |
| F000481 | Metagenome / Metatranscriptome | 1089 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0188874_10045401 | F000481 | N/A | TEKLDITIKKHEELIPTVTKTQVMVDLYWKCYAYGDELKPHIEFLDGIMMSSTRDIAPSCVENVDELIERQEKSLVQLETKRGVVKDLIDKGKKILEHPDKPRFLEGHVQRIEMGWDDSKQKAQDRLKLLQETKDAWVGYAENNESIAAEFEKAEEEIKRVKKRFNLHSALDDLKKKTRYLQHLK |
| Ga0188874_10045402 | F000139 | N/A | MCITLPDDKKKIVEKEIKAVSEKLEVNGRFKDKVDKLGEFCTELTNFDSSLKAIDAWKDKATSELDDIRNSSGNMLPEDRVARTMDLQEDIAAKCEILVKNAETEKELLPQGDKVPQDAQDFKDELTRITKYVTDLQAKTKAECDKYSEDVKFWAEYRTGIKEFTPWLGTSEKSCIEGLSKPSNLDEVKALNDKVNGFAKSCDNYLKVLMAADAAAKKMTTHVEADKEVAALKERFDKVKAVSDGWVSKVDTLLKEWTLLDNTVTELNQWVAKDKSAEGENQFSLEKMESTLGELKNIFKQKEKLVDGL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |