Basic Information | |
---|---|
Taxon OID | 3300018831 Open in IMG/M |
Scaffold ID | Ga0192949_1054098 Open in IMG/M |
Source Dataset Name | Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_082 - TARA_N000001386 (ERX1789378-ERR1719149) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | Canada's Michael Smith Genome Sciences Centre |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 812 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Atlantic Ocean: TARA_082 | |||||||
Coordinates | Lat. (o) | -47.1863 | Long. (o) | -58.2902 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F002906 | Metagenome / Metatranscriptome | 521 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0192949_10540981 | F002906 | GGAGG | VAATGDPHLQNVLGQRFDLMKPGNHVLINIPRGRQKNALLRVQADARQLGGQCADMYFQEVNITGVWVQAKGSSGLRFQAQGVYDEQPKWMEFGKVQVKVAHGHTQSGAKYLNLYVKHLGHSGLAVGGLLGDDDHTEAAMPTEACAHKLSLLQVSSQAAPSASVFSVAEASFA |
⦗Top⦘ |