NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0192870_1027673

Scaffold Ga0192870_1027673


Overview

Basic Information
Taxon OID3300018836 Open in IMG/M
Scaffold IDGa0192870_1027673 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_066 - TARA_N000000807 (ERX1789715-ERR1719504)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)972
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameAtlantic Ocean: TARA_066
CoordinatesLat. (o)-34.8901Long. (o)18.0459Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030404Metagenome / Metatranscriptome185Y
F062799Metagenome / Metatranscriptome130N

Sequences

Protein IDFamilyRBSSequence
Ga0192870_10276731F030404N/AMILVALCTSALAFAPPPRRGPRWTPLAYGRRGDADHDRWQSTADELTKWRGDEATVSKFWRIDCDDDGFTWERRWPRREPVVEDVSWDRITRVCWECGEWLCMDNFYLIADDDDREWVVPSGALNYQRLVDVLDRKGMFPTETYVACQCASEGGFTICEENANAKAPSANRSHVDAQRAYFKKRREAAQAARDAETAAKSI
Ga0192870_10276732F062799N/AMGNIAARQASRSIYHDPSIRRALQQRGFATTAQKKPQAPNPQLRVALQARYGELALQKKPQDSGKVRQLVASTGAAYRAPACDPWARGQLFR
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