NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193200_1024013

Scaffold Ga0193200_1024013


Overview

Basic Information
Taxon OID3300018840 Open in IMG/M
Scaffold IDGa0193200_1024013 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_039 - TARA_N000000013 (ERX1782199-ERR1712136)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2005
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameIndian Ocean: TARA_039
CoordinatesLat. (o)18.5743Long. (o)66.5029Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F060480Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0193200_10240131F060480N/AMGNKTCVEKCPVPDLCNDDEIQCGKADLPAGVWPDCIRDDICVADGCECQTTGNDGSLCPLWCVTTCTDTQILCPGGKDSNGCKEADVCIDRPLSDDNTLCPGYCPSECDLVDEHVCSTPPDNGCPQPPTCKTKEVDHEGEYCDEQHCQLICETPYKFCAGEQMIDGCYEADICVPRGKTSDDSAYCDGNCPITCRDSEILCDGQIIYGGEKEGCKAEDTCHQKARDVNGQYCPDNSDSHECPITCPEDTHQCPTRTNSDNCKEQATCTPCTKDINDECCPIASDCPALCQPHEKECQESGTDEYGCPLPPTCVVQERDFYGELCTVHCPGECNDGQIECPGERDDTGCQKPNFCVPLSKKLWGDDVGDWCPGFCPADCADWENYCPAVQDPCDGCPTEPVCKPKAKDVNGIYCPATSASHGCAISCKTLDGLETICAAYEDPTVPGCQEPLTCLPRTTGTDGSLCPSHSVCPKKCASTEKQCTQGYDDNDCKQEDLCIPVPLDAINGQPCLDFECPPTCDEAVQKYCQGQYQINAEGQLCPKRDYCVDRVLDNNGIRCPGHCLPDCAEGQVTELQNGVDARGCPLSAICVAA
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