NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0192933_1012414

Scaffold Ga0192933_1012414


Overview

Basic Information
Taxon OID3300018841 Open in IMG/M
Scaffold IDGa0192933_1012414 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_076 - TARA_N000000884 (ERX1789477-ERR1719315)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1640
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameSouth Atlantic Ocean: TARA_076
CoordinatesLat. (o)-21.004Long. (o)-35.3168Alt. (m)Depth (m)150
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F096326Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0192933_10124142F096326N/AMKYNNVQYNTLKYNVVQYYTVQYCKVQCSTVMYSTISHTVPYCSVLSPQVIIPFVYKPYLERRCSPSAPSYVLPRTPANSCHEAAISCHEAATSCHITTTSYFHSITLAENFSPCLKNVPTDLSFDVFCKKMKNKPLFNIHCVNISCIFLPLLPYCEICQFVQCSL

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