NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0193500_1013585

Scaffold Ga0193500_1013585


Overview

Basic Information
Taxon OID3300018847 Open in IMG/M
Scaffold IDGa0193500_1013585 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_138 - TARA_N000003005 (ERX1789704-ERR1719166)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1337
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameNorth Pacific Ocean: TARA_138
CoordinatesLat. (o)6.3199Long. (o)-102.96Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000061Metagenome / Metatranscriptome2899Y
F001601Metatranscriptome664Y

Sequences

Protein IDFamilyRBSSequence
Ga0193500_10135851F000061GAGMFYQVSVKIREVGKWKSADYTIKDDADAGFVPERLRIWLSSKPGDSPHGLYYENCPNVQYGFFGHLEIITHTAVEVLTTYLEECHEKFSPCANDGCDWKWGAWGEDVFAQRCMDHHYVDKVEAFDVATDGACEADRPEGQKKNKKWYPEDCSDLKTATAHPFKKPDAFKKCLAEMA
Ga0193500_10135852F001601N/AAGLVALVGTARWGMSSNLSALQSKEERVKIVPSFPNCSKAGEDCMSTGCCQVSGHTCFTKGAGKAQCNRTCTVGENGFTCGVIDPHSVPVAMPLGQNLYCFSVYTKDIGNDALVNHELDLLNIVAAQSKGIFACEQWDVFSDVSVPIDKDGYKTIKVDDKFNEFHQLKRKNSGT
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.