NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193199_1016564

Scaffold Ga0193199_1016564


Overview

Basic Information
Taxon OID3300018859 Open in IMG/M
Scaffold IDGa0193199_1016564 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_039 - TARA_N000000012 (ERX1789645-ERR1719429)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1524
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameIndian Ocean: TARA_039
CoordinatesLat. (o)18.5745Long. (o)66.4895Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005303Metagenome / Metatranscriptome405Y

Sequences

Protein IDFamilyRBSSequence
Ga0193199_10165641F005303GGAVLLLQFKILLPEGVDTINHLLDELDFRVTQTMLVGNVISVTSLAARLSAGTTGLEVELFAPGLQTINAVLGPAGQVNVDGGTHASSQVGGAGVDVAELLGVLEVLATFSLDGFTDSGDTLGEPLEDSLDVTSLLHGDDTELILLIDPDQEGLGIVVEDTTALGPVTLHTGNLQVGITRHEEEMVIDQLLADLLVHASQSVVVASQITAELGEGTLHQVLNTNTLLLGDARGQTESLDGATNTDSDRVDWDFWVDVANNLVDIHVRDVLEVGGETVVLADEGIEDILEVDVGVLVTGVDAAVLVVELDSASNGLGQGEARGLGDVGAKLVPLFLGHVLGNQAVGGLDVGEFTGHFCVFVCLVLRKDCTAQ
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