Basic Information | |
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Taxon OID | 3300018862 Open in IMG/M |
Scaffold ID | Ga0193308_1012067 Open in IMG/M |
Source Dataset Name | Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_102 - TARA_N000001652 (ERX1789608-ERR1719146) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | Canada's Michael Smith Genome Sciences Centre |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1288 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Syndiniales → Amoebophryaceae → Amoebophrya → unclassified Amoebophrya → Amoebophrya sp. A120 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
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Location Name | South Pacific Ocean: TARA_102 | |||||||
Coordinates | Lat. (o) | -5.2669 | Long. (o) | -85.2732 | Alt. (m) | Depth (m) | 40 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000216 | Metatranscriptome | 1562 | Y |
F001159 | Metagenome / Metatranscriptome | 762 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0193308_10120671 | F001159 | N/A | MILACQYFIVYGGIQVARTWTQFTSLAANFTSKFEKAMMTATASMNFAPMLAVLFIAARMRALQMDPVNGNPQRWAQNCFFMCTYALLAQTICSVCVPLVLEGEVKKGKTEGDMEYTVQNTTLGTCLAVGRYVMMICIYVGFSCVIYSILTMEHPNGKVYTPPISVTMQCVINLTFQFFFVYLWIWVAITVKEFTGQEWTLMTQTMETPREQCSTAPCWPSCLLAPACGH |
Ga0193308_10120672 | F000216 | N/A | MLAILFVGTRMRALMLTDNMGAPPGWAQDGMYMATWALLIQFVMIIITPCATGSPGQVDQDGNIKWEPEQPILFYAVQAIRWLAYILLYGGFIAVIVSVFTMTPATCTGRGSVPLVGDGKIPGTDAGVPGYDGIKEPYGPNDVIGPNNKGPAADIPAGFF |
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