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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300018865 Open in IMG/M |
| Scaffold ID | Ga0193359_1029254 Open in IMG/M |
| Source Dataset Name | Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_111 - TARA_N000001824 (ERX1789688-ERR1719211) |
| Source Dataset Category | Metatranscriptome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Canada's Michael Smith Genome Sciences Centre |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1042 |
| Total Scaffold Genes | 2 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | South Pacific Ocean: TARA_111 | |||||||
| Coordinates | Lat. (o) | -16.9763 | Long. (o) | -100.6794 | Alt. (m) | Depth (m) | 90 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F010519 | Metagenome / Metatranscriptome | 302 | Y |
| F085100 | Metatranscriptome | 111 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0193359_10292541 | F085100 | AGCAG | LLITVVGLVVNRGSMVNSVVNSMVGNWGMVGNHGGSVNCMVNNGGVNCMVNSRGVNCMVNSRGSMMDSVSTESCERNGWPTSHKGDKSNQSKDLHDVVVWKDP |
| Ga0193359_10292542 | F010519 | N/A | MTISGRITILSGIRSGGRSIGDWLNLMSILSISIVDLLANLLGESKLNSLASRGSKLGDALLRGNSGVFNLWDSDALLLSEVLTADSWERDWLVDTGLDWLRVGNLNSWLNRGDNRDIVASLLGNLLAVVVSIAVVSVSWGWLADGDHLGVTLLLEGNLDGLGSGGLSLLLVRVGADLVVDLLNALGTDGTGDWVALFFVNNDLDGKLNWVADSLKSWGADFSGLNNILN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |