NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187844_10048549

Scaffold Ga0187844_10048549


Overview

Basic Information
Taxon OID3300018868 Open in IMG/M
Scaffold IDGa0187844_10048549 Open in IMG/M
Source Dataset NameOligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_50
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2017
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.008Long. (o)-89.701Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009066Metagenome323Y
F043823Metagenome155N
F048834Metagenome147N

Sequences

Protein IDFamilyRBSSequence
Ga0187844_100485492F043823N/AMILMKKVKTNLTIDPKVKRNGERMAKKGGLSLSAFITTLLVKELAKEKRR
Ga0187844_100485493F048834AGGAGGVALPTVKDWAVALDAYVAGDREEVVPPGWFTKIDISKQWGKSDVYTNKILTRMIKAGGAERKVFSIRIKICDRGSKVGHCRRVPHYRLTPPKSRKS
Ga0187844_100485495F009066GGAGMSPEHEKHLAGILSDLVKDVDAKYRKGQDQHGGALWRRPVWKDAWEECLDLCTYLHTLRMQLSVIADLALLGASDESVAASSSRESCRQILAVLEGFPSAVDKK
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