NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193162_1000039

Scaffold Ga0193162_1000039


Overview

Basic Information
Taxon OID3300018872 Open in IMG/M
Scaffold IDGa0193162_1000039 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_025 - TARA_E500000196 (ERX1789513-ERR1719216)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5373
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameMediterranean Sea: TARA_025
CoordinatesLat. (o)39.4046Long. (o)19.3886Alt. (m)Depth (m)50
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F094857Metatranscriptome105N
F104391Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0193162_10000395F104391N/AMKENEGQLASPVKEECLVNSDPLDQEAKMDLKDQMVNLDHLDPRDLLDTRDPLDWLVFLVSEVFPGLKVLRVEEVIQAFLDQLVPMAGLARGVNKALLVPQDPLGKLEVLEIQGRQDLLVNRAQLV
Ga0193162_10000396F094857AGGVSLVCLVKLADRALLDLEVCLDKRALMDQGDLQAKEDHQDLKACQAWKAVREPLVLMDQTDRLDHLDLMDLLETEGFLVYQVLLAQLDPQGSKDLKEKGETLASQESKVLRDHPDLLVLLGLLVSEVSGARRVHQESKELLAWEVGLVTRVHLVQQE
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